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Publications

The latest updated list of publications by Geert van den Bogaart can be found here.

2023

• Warner, H.M., Chen, T., Mahajan, S., te Beest, M., Linders, P., Franciosa, G., Bianchi, F., & van den Bogaart, G. (2023) Trafficking machinery is rapidly primed to facilitate polarised IL-6 secretion in dendritic cells. BioRXiv preprint
• Maassen, S., Warner, H.M., Grijpstra, P., & and van den Bogaart, G. (2023) A quantitative in vitro collagen uptake assay. MethodsX. In press. Link.
• Warner, H.M., Franciosa, G., van der Borg, G., Faas, F., Koenig, C., de Boer, R., Classens, R., Maassen, S., Baranov, M.V., Mahajan, S., Dabral, D., Coenen, B., Bianchi, F., van Hilten, N., Risselada, H.J., Roos, W.H., Olsen, J., Querol Cano, L., & van den Bogaart, G. (2023) Cofilin-driven nuclear deformation drives dendritic cell migration through the extracellular matrix. BioRXiv preprint
• Frans, M.T., Kuipers, E.M., Bianchi, F., & and van den Bogaart, G. (2023) Unveiling the impact of GOLM1/GP73 on cytokine production in cancer and infectious disease. Immunol. Cell Biol. in press. Link.
• Stempels, F.C., Jiang, M., Warner, H.M., Moser, M.L., Janssens, M.H., Maassen, S., Nelen, I.H., de Boer, R., Jiemy, W.F., Knight, D., Selley, J., O'Cualain, R., Baranov, M.V., Burgers, T.C.Q., Sansevrino, R., Milovanovic, D., Heeringa, P., Jones, M.C., Vlijm, R., Ter Beest, M., & van den Bogaart, G. (2023) Giant worm-shaped ESCRT scaffolds surround actin-independent integrin clusters. J. Cell Biol. 222: e202205130. Pubmed; Primary data #1; Primary data #2; Primary data #3; Primary data #4; Primary data #5; Primary data #6.
• Van der Borg, G., Warner, H., Ioannidis, M., van den Bogaart, G., & Roos, W.H. (2023) PLA 3D printing as a straightforward and versatile fabrication method for PDMS molds. Polymers. 15: 1498.Pubmed.
• Maassen, S., Coenen, B., Dulk, S., van der Werff, M., Warner, H., Spada, F., Frischmuth, T., Incarnato, D., & van den Bogaart, G. (2023) 5-Ethynyluridine: a bio-orthogonal uridine variant for mRNA-based therapies and vaccines. Chembiochem. 24(5):e202200658 Pubmed; Primary data.
• Maassen, S., Coenen, B., Ioannidis, M., Harber, K., Grijpstra, P., Van den Bossche, J., & van den Bogaart, G. (2023) Itaconate promotes a wound resolving phenotype in pro-inflammatory macrophages. Redox Biol. 59: 102591. Pubmed; Primary data.

2022

• Ioannidis, M., Mahata, S.K., & van den Bogaart G. (2022) The immunomodulatory functions of Chromogranin A-derived peptide Pancreastatin. Peptides. 158: 170893. link
• Baranov, M.V., Ioannidis, M., Balahsioui, S., Boersma, A., de Boer R., Kumar, M., Niwa, M., Hirayama, T., Zhou, Q., Hopkins, T.M., Grijpstra, P., Thutupalli, S., Sacanna, S., & van den Bogaart G. (2022) Irregular particle morphology and membrane rupture facilitate ion gradients in the lumen of phagosomes. Biophys. Rep. 2: 100069. link; Primary data.
• Warner, H.M., Mahajan, S., & van den Bogaart, G. (2022) Rerouting trafficking circuits through posttranslational SNARE modifications. J. Cell Sci. 135: jcs260112. link.
• Bazioti, V., La Rose, A.M., Maassen, S., Bianchi, F., de Boer, R., Halmos, B., Dabral, D., Guilbaud, E., Flohr-Svendsen, A., Groenen, A.G., Marmolejo-Garza, A., Koster, M.H., Kloosterhuis, N.J., Havinga, R., Pranger, A.T., Langelaar-Makkinje, M., de Bruin, A., van de Sluis, B., Kohan, A.B., Yvan-Charvet, L., van den Bogaart, G., & Westerterp, M. (2022) T cell cholesterol efflux suppresses apoptosis and senescence and increases atherosclerosis in middle aged mice. Nat. Commun. 13: 3799. Pubmed.
• Maassen, S., Warner, H., Ioannidis, M., Jansma, J., Markus, H., El Aidy, S., Chiara, M., Luis Chiara, J., Maierhofer, L., Weavers, H. & van den Bogaart, G. (2022) Mitochondrial interaction of fibrosis-protective 5-methoxy tryptophan enhances collagen uptake by macrophages. Free Radic. Biol. Med. 188: 287-297. Pubmed ; Primary data.
• Dabral, D., Ghosh, H., Niwa, M., Hirayama, T., de Boer, R., de Vos, M. & van den Bogaart, G. (2022) Iron regulates contrasting toxicity of uropathogenic Escherichia coli in macrophages and epithelial cells. BioRXiv preprint
• Stempels, F.C., de Wit, A.S., Swierstra, M.S., Maassen, S., Bianchi, F., van den Bogaart, G., & Baranov, M.V. (2022) A sensitive and less cytotoxic assay for identification of proliferating T cells based on bioorthogonally-functionalized uridine analogue. J. Immunol. Methods. 502: 113228. Pubmed; Primary data.
• Kumar, M., Singh, A., Del Secco, B., Baranov, M.V., van den Bogaart, G., & Sacanna, S., & Thutupalli, S. (2022) Assembling anisotropic colloids using curvature-mediated lipid sorting. Soft Matter. 18: 1757-1766. Pubmed
• Stempels, F.C., Janssens, M.H., Ter Beest, M., Mesman, R.J., Revelo, N.H., Ioannidis, M., & van den Bogaart, G. (2022) Novel and conventional inhibitors of canonical autophagy differently affect LC3-associated phagocytosis. FEBS Lett. 596: 491-509. Pubmed; Primary data.
• Linders, P.T.A., Ioannidis, M., ter Beest, M., & van den Bogaart, G. (2022) Fluorescence lifetime imaging of pH along the secretory pathway. ACS Cem. Biol. 17: 240-251. Pubmed; Primary data.
• Bilderbeek, R., Baranov, M., van den Bogaart., G., & Bianchi, F. (2022) Transmembrane helices are an overlooked and evolutionarily conserved source of major histocompatibility complex class II epitopes. Front. Immunol. 12: 763044. Pubmed; Code and bioinformatics analysis.
• Muntjewerff, E.M., Phillipson, M., Christoffersson, G., Mahata, S.K., & van den Bogaart, G. (2022) Putative regulation of macrophage-mediated inflammation by catestatin. Trends Immunol. 43: 41-50. Pubmed.
• Bandyopadhyay, G., Tang, K., Webster, N.J.G., van den Bogaart, G., & Mahata, S.K. (2022) Catestatin induces glycogenesis by stimulating the phosphoinositide 3-kinase-AKT pathway. Acta Physiol. 235: e13775. Pubmed.

2021

• Linders, P.T.A., Gerretsen, E., Ashikov, A., Vals, M.A., de Boer, R., Revelo, N.H., Arts, R., Baerenfaenger, M., Zijlstra, F., Huijben, K., Raymond, K., Muru, K., Fjodorova, O., Pajusalu, S., Õunap, K., ter Beest, M., Lefeber, D., & van den Bogaart, G. (2021) Congenital disorder of glycosylation caused by starting site-specific variant in syntaxin-5. Nature Communications. 12: 6227 Pubmed; Primary microscopy data.
• Liu, M.A., Jati, S., Tang, K., van den Bogaart, G., Ghosh, G., & Mahata, S.K. (2021) Chromogranin A plays a crucial role in the age-related development of insulin resistance and hypertension. BioRXiv preprint
• Dabral, D., & van den Bogaart, G. (2021) The Roles of Phospholipase A 2 in Phagocytes. Front. Cell Dev. Biol. 9: 673502 Pubmed.
• Capelluto, D.G.S., Conde, C.B., Tumbarello, D.A., & van den Bogaart, G. (2021) Editorial: Signaling Proteins for Endosomal and Lysosomal Function. Front. Cell Dev. Biol. 9: 821719 Pubmed.
• Muntjewerff, E.M., Parv, K., Mahata, S.K., Phillipson, M., Christoffersson, G., & van den Bogaart, G. (2021) The anti-inflammatory peptide Catestatin blocks chemotaxis. J. Leukocyt. Biol. 112: 273-278. Pubmed
  Featured in The Fair Journal.
• Ottria, A., Zimmermann, M., Paardekooper, L.M., Carvalheiro, T., Vazirpanah, N., Silva-Cardoso, S., Affandi, A.J., Chouri, E., van de Kroef, M., Tieland, R.G., Bekker, C.P.J., Wichers, C.G.K., Rossato, M., Mocholi-Gimeno, E., Tekstra, J., Ton, E., van Laar, J.M., Cossu, M., Beretta, L., Garcia Perez, S., Pandit, A., Bonte-Mineur, F., Reedquist, K.A., van den Bogaart, G., Radstake, T.R.D.J., & Marut, W. (2021) Hypoxia and TLR9 activation drive CXCL4 production in systemic sclerosis plasmacytoid dendritic cells via mtROS and HIF-2alpha. Rheumatology. keab532 Pubmed.
• Nie, L., Nusantara, A., Damle, V., Baranov, M.V., Chipaux, M., Reyes-San-Martin, C., Hamoh, T., Epperla, C., Guricova, M., Cigler, P., van den Bogaart, G., & Schirhagl, R. (2021) Quantum sensing of free radicals in primary human dendritic cells. Nano Letters. 22: 1818-1825. Pubmed.
• Iyer, A., Baranov, M., Foster, A.J., Chordia, S., Roelfes, G., Vlijm, R., van den Bogaart, G., & Poolman, B. (2021) Chemogenetic tags with probe exchange for live-cell fluorescence microscopy. ACS Chem. Biol. 16: 891-904 Pubmed.
• Ying, W., Tang, K., Avolio, E., Schilling, J.M., Pasqua, T., Liu, M.A., Cheng, H., Gao, H., Zhang, J., Mahata, S., Ko, M.S., Bandyopadhyay, G., Das, S., Roth, D.M., Sahoo, D., Webster, N.J.G., Sheikh, F., Ghosh, G., Patel, H.H., Ghosh, P., van den Bogaart, G., & Mahata, S.K. (2021) Immunosuppression of macrophages underlies the cardioprotective effects of CST (Catestatin). Hypertension. 77: 1670-1682. Pubmed.
• Muntjewerff, E.M., Tang, K., Lutter, L., Christoffersson, G., Nicolasen, M.J.T., Gao Gajanan, H., Katkar, G.D., Das, S., ter Beest, M., Ying, W., Ghosh, P., El Aidy, S., Oldenburg, B., van den Bogaart, G., & Mahata, S.K. (2021) Chromogranin A regulates gut permeability via the antagonistic actions of its proteolytic peptides. Acta Physiol. e13655. Pubmed; Primary data.
  Featured in The Fair Journal.
• Altulea, D., Maassen, S., Baranov, M.V., & van den Bogaart, G. What makes (hydroxy)chloroquine ineffective against COVID-19: insights from cell biology. J. Mol. Cell Biol. 13: 175-184 Pubmed.
• Baranov, M.V., Kumar, M., Sacanna, S., Thutupalli, S., & van den Bogaart, G. (2021) Modulation of immune responses by particle size and shape. Front. Immunol. 11:607945. Pubmed.

2020

• Baranov, M.V., Bianchi, F., & van den Bogaart, G. (2020) The PIKfyve Inhibitor Apilimod: A Double-Edged Sword against COVID-19. Cells. 10: E30 Pubmed.
• Muntjewerff, E.M., Meesters, L.D.., van den Bogaart, G., & Revelo, N.H. (2020) Reverse signaling by MHC-I molecules in immune and non-immune cell types. Front. Immunol. 15: 605958 Pubmed.
• Bianchi, F., & van den Bogaart, G. (2020) Vacuolar escape of foodborne bacterial pathogens. J. Cell Sci. 134: jcs247221 Pubmed.
• Linders, P.T.A., Peters, E., ter Beest, M., Lefeber, D., & van den Bogaart, G. (2020) Sugary logistics gone wrong: membrane trafficking and congenital disorders of glycosylation. Int. J. Mol. Sci. 21: 4654 Pubmed.
• Muntjewerff, E.M., Meesters, L.D., & van den Bogaart, G. (2020) Antigen cross-presentation by macrophages. Front. Immunol. 11: 1296 Pubmed.
• Revelo, N.H., Ter Beest, M., & van den Bogaart, G. (2020) Membrane trafficking as an active regulator of constitutively secreted cytokines. J Cell Sci. 133: jcs234781 Pubmed.

2019

• Paardekooper, L.M., van Vroonhoven, E., te Beest, M., & van den Bogaart, G. (2019) Radical stress is more cytotoxic in the nucleus than in other organelles. Int J Mol Sci. 20: 4147 Pubmed.
• Linders, P.T., Horst, C.V., Beest, M.T., & van den Bogaart, G. (2019) Stx5-mediated ER-Golgi transport in mammals and yeast. Cells. 8: E780. Pubmed.
• Baranov, M.V., Alis Olea, R., & van den Bogaart, G. (2019) Chasing Uptake: Super-Resolution Microscopy in Endocytosis and Phagocytosis. Trends Cell Biol. 29: 727-739. Pubmed.
• Paardekooper, L.M., Dingjan, I., Linders, P.T.A., Staal, A.H.J., Cristescu, S.M., Verberk, W.C.E.P., & van den Bogaart, G. (2019) Human monocyte-derived dendritic cells produce millimolar concentrations of ROS in phagosomes per second. Front. Immunol. 10: 1216. Pubmed.
• Paardekooper, L.M., Vos, W., & van den Bogaart, G. (2019) Oxygen in the tumor microenvironment: effects on dendritic cell function. Oncotarget. 10: 883-896. Pubmed.
• Baranov, M.V., Bianchi, F., Schirmacher, A., van Aart, M.A.C., Maassen, S., Muntjewerff, E.M., Dingjan, I., ter Beest, M., Verdoes, M., Keyser, S.G.L., Bertozzi, C.R., Diederichsen, U., & van den Bogaart, G. (2019) The phosphoinositide kinase PIKfyve promotes cathepsin-S-mediated major histocompatibility complex class II antigen presentation. iScience. 11: 160-177. Pubmed.
  Featured in Derek Lowe's blog in Science.
• Sahu, B.S., Mahata, S., Bandyopadhyay, K., Mahata, M., Avolio, E., Pasqua, T., Sahu, C., Bandyopadhyay, G.K., Bartolomucci, A., Webster, N.J.G., van den Bogaart, G., Fischer-Colbrie, R., Corti, A., Eiden, L.E., & Mahata, S.K. (2018) Catestatin regulates vesicular quanta through modulation of cholinergic and peptidergic (PACAPergic) stimulation in PC12 cells. Cell Tissue Res. 376: 51-70. Pubmed.

2018

• Paardekooper, L.M., Bendix, M.B., Ottria, A., de Haer, L.W., Ter Beest, M., Radstake, T.R., Marut, W., & van den Bogaart, G. (2018) Hypoxia potentiates monocyte-derived dendritic cells for release of tumor necrosis factor alpha via MAP3K8. Biosci Rep. 38: 1-13. Pubmed.
• Muntjewerff, E.M., Dunkel, G., Nicolasen, M.J.T., Mahata, S.K., & van den Bogaart, G. (2018) Catestatin as a target for treatment of inflammatory diseases. Front. Immunol. 9: 2199. Pubmed.
• Verboogen, D.R.J., Revelo, N.H., Ter Beest, M., & van den Bogaart, G. (2018) Interleukin-6 secretion is limited by self-signaling in endosomes. J. Mol. Cell. Biol. 11: 144-157. Pubmed.
• Dingjan. I., Linders, P.T.A., Verboogen, D.R.J., Revelo, N.H., Ter Beest, M., & van den Bogaart, G. (2018) Endosomal and Phagosomal SNAREs. Physiol Rev. 98: 1465-1492. Pubmed.
• Verboogen, D.R.J., Ter Beest, M., Honigmann, A., & van den Bogaart, G. (2018) Secretory vesicles of immune cells contain only a limited number of interleukin 6 molecules. FEBS Lett. 592: 1535-1544. Pubmed.
• Ashikov, A., Abu Bakar, N., Wen, X., Niemeijer, M., Rodrigues, G., Osorio, P., Brand-Arzamendi, K., Hasadsri, L., Hansikova, H., Raymond, K., Vicogne, D., Simon, M.E.H., Pfundt, R., Timal, S., Beumers, R., Biot, C., Smeets, R., Kersten, M., Huijben, K., Linders, P.T.A., van den Bogaart, G., van Hijum, S.A.F.T., Rodenburg, R., van den Heuvel, L.P., van Spronsen, F., Honzik, T., Foulquier, F., van Scherpenzeel, M., & Lefeber, D.J. (2018) Integrating glycomics and genomics uncovers SLC10A7 as essential factor for bone mineralization by regulating post-Golgi protein transport and glycosylation. Human Mol. Gen. 27: 3029-3045. Pubmed.

2017

• Verboogen, D.R.J., Baranov, M.V., ter Beest, M., & van den Bogaart, G. (2017) Visualizing intracellular SNARE trafficking by fluorescence lifetime imaging microscopy. J. Vis. Exp. 130: e56745. Pubmed.
• Bianchi, F., Textor, J., & van den Bogaart, G. (2017) Transmembrane helices are an overlooked source of MHC class I epitopes. Front. Immunol. 8: 1118. Pubmed.
• Paardekooper, L.M., van den Bogaart, G., Kox, M., Dingjan, I., Neerincx, A.H., Bendix, M.B., ter Beest, M., Harren, F.J.M., Risby, T., Pickkers, P., Marczin, N., & Cristescu, S.M. (2017) Ethylene, an early marker of systemic inflammation in humans. Sci. Rep. 7: 6889. Pubmed.
  Featured in The Medical News, Health Canal, MedicalXpress, Sci-News, Kennislink (Dutch), NZG Nationale Zorggids (Dutch), and Nederlands Tijdschrift voor Tandheelkunde (Dutch) .
• Dingjan, I., Paardekooper, L.M., Verboogen, D.R.J., Fischer von Mollard, G., ter Beest, M., & van den Bogaart, G. (2017) VAMP8-mediated NOX2 recruitment to endosomes is necessary for antigen release. Eur. J. Cell. Biol. 96: 705-714. Pubmed.
• Verboogen, D.R.J., González Mancha, N., Ter Beest, M., & van den Bogaart, G. (2017) Fluorescence lifetime imaging microscopy reveals rerouting of SNARE trafficking driving dendritic cell activation. eLife. 6: e23525. Pubmed.
• Baranov, M.V., Revelo, N.H., Verboogen, D.R.J., Ter Beest, M., & van den Bogaart G. (2017) SWAP70 is a universal GEF-like adapter for tethering actin to phagosomes. Small GTPases. 10: 1-12. Pubmed.
• Zuidscherwoude, M., Dunlock, V.E., van den Bogaart, G., van Deventer, S.J., van der Schaaf, A., van Oostrum, J., Goedhart, J., In ‘t Hout, J., Hämmerling, G.J., Tanaka, S., Nadler, A., Schultz, C., Wright, M.D., Adjobo-Hermans, M.J.W., & van Spriel, A.B. (2017) Tetraspanin microdomains control localized protein kinase C signaling in B cells. Sci Signal. 10: eaag2755. Pubmed.
• Dingjan, I., Linders, P.T., van den Bekerom, L., Baranov, M.V., Halder, P., Ter Beest, M., & van den Bogaart, G. (2017) Oxidized phagosomal NOX2 is replenished from lysosomes. J Cell Sci. 130: 1285-1298. Pubmed.
Featured in JCS editorial.

2016

• Baranov, M.V., Revelo, N.H., Dingjan, I., Maraspini, R., Ter Beest, M., Honigmann, A., & van den Bogaart G. (2016) SWAP70 organizes the actin cytoskeleton and is essential for phagocytosis. Cell Rep. 17: 1518-1531. Pubmed.
• Farsi, Z., Preobraschenski, J., van den Bogaart, G., Riedel, D., Jahn, R., & Woehler, A. (2016) Single-vesicle imaging reveals different transport mechanisms between glutamatergic and GABAergic vesicles. Science. 351: 981-984. Pubmed.
• Dingjan, I., Verboogen, D.R., Paardekooper, L.M., Revelo, N.H., Sittig, S.P., Visser, L.J., Mollard, G.F., Henriet, S.S., Figdor, C.G., Ter Beest, M., & van den Bogaart, G. (2016) Lipid peroxidation causes endosomal antigen release for cross-presentation. Sci. Rep. 6: 22064. Pubmed.
• Milovanovic, D., Platen, M., Junius, M., Diederichsen, U., Schaap, I.A., Honigmann, A., Jahn, R., & van den Bogaart, G. (2016) Calcium promotes the formation of syntaxin 1 mesoscale domains through phosphatidylinositol 4,5-bisphosphate. J. Biol. Chem. 291: 7868-7876 Pubmed.
• Jansen, J.C., Cirak, S., van Scherpenzeel, M., Timal, S., Reunert, J., Rust, S., Pérez, B., Vicogne, D., Krawitz, P., Wada, Y., Ashikov, A., Pérez-Cerdá, C., Medrano, C., Arnoldy, A., Hoischen, A., Huijben, K., Steenbergen, G., Quelhas, D., Diogo, L., Rymen, D., Jaeken, J., Guffon, N., Cheillan, D., van den Heuvel, L.P., Maeda, Y., Kaiser, O., Schara, U., Gerner, P., van den Boogert, M.A., Holleboom, A.G., Nassogne, M.C., Sokal, E., Salomon, J., van den Bogaart, G., Drenth, J.P., Huynen, M.A., Veltman, J.A., Wevers, R.A., Morava, E., Matthijs, G., Foulquier, F., Marquardt, T., & Lefeber, D.J. (2016) CCDC115 Deficiency Causes a Disorder of Golgi Homeostasis with Abnormal Protein Glycosylation. Am. J. Hum. Genet. 98: 310-321 Pubmed.
• Jansen, J.C., Timal, S., van Scherpenzeel, M., Michelakakis, H., Vicogne, D., Ashikov, A., Moraitou, M., Hoischen, A., Huijben, K., Steenbergen, G., van den Boogert, M.A., Porta, F., Calvo, P.L., Mavrikou, M., Cenacchi, G., van den Bogaart, G., Salomon, J., Holleboom, A.G., Rodenburg, R.J., Drenth, J.P., Huynen, M.A., Wevers, R.A., Morava, E., Foulquier, F., Veltman, J.A., & Lefeber, D.J. (2016) TMEM199 deficiency is a disorder of Golgi homeostasis characterized by elevated aminotransferases, alkaline phosphatase, and cholesterol and abnormal glycosylation. Am. J. Hum. Genet. 98: 322-330 Pubmed.
• Verboogen, D.R., Dingjan, I., Revelo, N.H., Visser, L.J., Ter Beest, M., & van den Bogaart, G. (2016) The dendritic cell side of the immunological synapse. Biomol. Concepts. 7: 17-28. Pubmed.

2015

• Zuidscherwoude, M., Göttfert, F., Dunlock, V.M., Figdor, C.G., van den Bogaart, G., & Spriel, A.B. (2015) The tetraspanin web revisited by super-resolution microscopy. Sci. Rep. 17: 12201 Pubmed.
• van Spriel, A.B., van den Bogaart, G., & Cambi, A. (2015) Editorial: Membrane domains as new drug targets. Front. Physiol. 6: 172 Pubmed.
• Milovanovic, D., Honigmann, A., Koike, S., Göttfert, F., Pähler, G., Junius, M, Müllar, S., Diederichsen, U., Janshoff, A., Grubmüller, H., Risselada, H.J., Eggeling, C., Hell, S.W., van den Bogaart, G., & Jahn, R. (2015) Hydrophobic mismatch sorts SNARE proteins into distinct membrane domains. Nat. Commun. 6: 5984 Pubmed.

2014

• Baranov, M.V., Ter Beest, M., Reinieren-Beeren, I., Cambi, A., Figdor, C.G. & van den Bogaart, G. (2014) Podosomes of dendritic cells facilitate antigen sampling. J. Cell Sci. 127: 1052-1064 Pubmed.
• Baranov, M.V., Ter Beest, M., & van den Bogaart, G. (2014) Reaching for far-flung antigen: how solid-core podosomes of dendritic cells transform into protrusive structures. Commun. Integr. Biol. 7: e29084 Link.
• van den Bogaart, G. & ter Beest, M. (2014) Domains of phosphoinositides in the plasma membrane. Cell Membrane Nanodomains: from Biochemistry to Nanoscopy. CRC Press. ISBN 9781482209914 Link.

2013

• Honigmann, A., van den Bogaart, G., Iraheta, E., Risselada, H.J., Milovanovic, D., Mueller, V., Muellar, S., Diederichsen, U., Fasshauer, D., Grubmüller, H., Hell, S.W., Eggeling, C., Kühnel, K. & Jahn, R. (2013) Phosphatidylinositol 4,5-bisphosphate clusters act as molecular beacons for vesicle recruitment. Nat. Struct. Mol. Biol. 20: 679-686 Pubmed.
• van den Bogaart, G., Lang, T. & Jahn, R. (2013) Microdomains of SNARE proteins in the plasma membrane. Curr. Top. Membr. 72: 193-230 Pubmed.
• Khuong, T.M., Habets, R.L., Kuenen, S., Witkowska, A., Kasprowicz, J., Swerts, J., Jahn, R., van den Bogaart, G. & Verstreken, P. (2013) Synaptic PI(3,4,5)P3 is required for Syntaxin1A clustering and neurotransmitter release. Neuron. 77: 1097-1108 Pubmed.
• Seidel, S.A., Dijkman, P.M., Lea, W.A., van den Bogaart, G., Jerabek-Willemsen, M., Lazic, A., Joseph, J.S., Srinivasan, P., Baaske, P., Simeonov, A., Katritch, I., Melo, F.A., Ladbury, J.E., Schreiber, G., Watts, A., Braun, D. & Duhr, S. (2013) Microscale thermophoresis quantifies biomolecular interactions under previously challenging conditions. Methods 59: 301-315 Pubmed.

2012

• Matta, S., Van Kolen, K., da Cunha, R., van den Bogaart, G., Mandemakers, W., Miskiewicz, K., De Bock, P., Morais, V.A., Vilain, S., Haddad, D., Delbroek, L., Swerts, J., Chávez-Gutiérrez, L., Esposito, G., Daneels, G., Karran, E., Holt, M., Gevaert, K., Moechars, D., De Strooper, B. & Verstreken, P. (2012) LRRK2 controls an EndoA phosphorylation cycle in synaptic endocytosis. Neuron 75: 1008-1021 Pubmed.
• van den Bogaart, G., Meyenberg, K., Diederichsen, U. & Jahn, R. (2012) Phosphatidylinositol 4,5-bisphosphate increases the Ca(2+) affinity of synaptotagmin-1 40-fold. J. Biol. Chem. 287: 16447-16453 Pubmed.
• Park, Y., Hernandez, J., van den Bogaart, G., Ahmed, S., Holt, M., Riedel, D. & Jahn, R. (2012) Controlling synaptotagmin activity by electrostatic screening. Nat. Struct. Mol. Biol. 19: 991-997 Pubmed.
• Vennekate, W., Schröder, S., Lin, C.C., van den Bogaart, G., Grunwald, M., Jahn, R. & Walla, P.J. (2012) Cis- and trans- membrane interactions of synaptotagmin-1. Proc. Natl. Acad. Sci. USA. 109: 11037-11042 Pubmed.

2011

• van den Bogaart, G., Meyenberg, K., Risselada, H.J., Amin, H., Willig, K.I., Hubrich, B.E., Dier, M., Hell, S.W., Grubmüller, H., Diederichsen, U. & Jahn, R. (2011) Membrane protein sequestering by ionic protein-lipid interactions. Nature 479: 552-555 Pubmed.
• van den Bogaart, G., Thutupalli, S., Risselada, J.H., Meyenberg, K., Holt, M., Riedel, D., Diederichsen, U., Herminghaus, S., Grubmüller, H. & Jahn, R. (2011) Synaptotagmin-1 may be a distance regulator acting upstream of SNARE nucleation. Nat. Struct. Mol. Biol. 18: 805-812 Pubmed.
• Meyenberg, K., Lygina, A.S., van den Bogaart, G., Jahn, R. & Diederichsen, U. (2011) SNARE derived peptide mimic inducing membrane fusion. Chem. Commun. 47: 9405-9407 Pubmed.
• Mika, J.T., Krasnikov, V., van den Bogaart, G., de Haan, F. & Poolman, B. (2011) Evaluation of pulsed-FRAP and conventional-FRAP for determination of protein mobility in prokaryotic cells. PLoS One 6: e25664 Pubmed.
• Meinema, A.C., Laba, J.K., Hapsari, R.A., Otten, R., Mulder, F.A., Kralt, A., van den Bogaart, G., Lusk, C.P., Poolman, B. & Veenhoff, L.M. (2011) Long unfolded linkers facilitate membrane protein import through the nuclear pore complex. Science 333: 90-93 Pubmed.
• Kusters, I., van den Bogaart, G., Kedrov, A., Krasnikov, V., Fulyani, F., Poolman, B. & Driessen, A.J.M. (2011) Quaternary structure of SecA in solution and bound to SecYEG probed at the single molecule level. Structure 19: 430-439 Pubmed.
• van den Bogaart, G. & Jahn, R. (2011) Inside insight to membrane fusion. Proc. Natl. Acad. Sci. USA. 108: 11729-11730 Pubmed.
• van den Bogaart, G. & Jahn, R. (2011) Counting the SNAREs needed for membrane fusion. J. Mol. Cell Biol. 3: 204-205 Pubmed.

2010

• van den Bogaart, G., Holt, M., Bunt, G., Riedel, D., Wouters, F.S. & Jahn, R. (2010) One SNARE complex is sufficient for membrane fusion. Nat. Struct. Mol. Biol. 17: 358-354 Pubmed.
• Mika, J.T., van den Bogaart, G., Veenhoff, L.M., Krasnikov, V. & Poolman, B. (2010) Molecular sieving properties of the cytoplasm of Escherichia coli and consequences of osmotic stress. Mol. Microbiol. 77: 200-207 Pubmed.
• Kusters, I., van den Bogaart, G., de Wit, J.G., Krasnikov, V., Poolman, B., & Driessen, A.J.M. (2010) Purification and functional reconstitution of the bacterial protein translocation pore, the SecYEG complex. Methods Mol. Biol. 619:131-143 Pubmed.

2009

• Ramadurai, S., Holt, A., Krasnikov, V., van den Bogaart, G., Killian, J.A. & Poolman, B. (2009) Lateral diffusion of membrane proteins. J. Am. Chem. Soc. 131: 12650-12656 Pubmed.
• van den Bogaart, G., Meinema, A.C., Krasnikov, V., Veenhoff, L.M. & Poolman, B. (2009) Nuclear transport factor directs localization of protein synthesis during mitosis. Nat. Cell Biol. 11: 350-356 Pubmed.

2008

• van den Bogaart, G., Velásquez, J., Mika, J.T. & Poolman, B. (2008) On the mechanism of pore-formation by melittin. J. Biol. Chem. 283: 33854-33857 Pubmed.
• van den Bogaart, G., Kusters, I., Velásquez, J., Mika, J.T., Krasnikov, V., Driessen, A.J.M. & Poolman, B. (2008) Dual-color fluorescence-burst analysis to study pore formation and protein-protein interactions. Methods 46: 123-130 Pubmed.
• Doeven, M.K., van den Bogaart, G., Krasnikov, V. & Poolman, B. (2008) Probing the catalytic cycle of the oligopeptide ABC transporter by fluorescence correlation spectroscopy. Biophys. J. 94: 3956-3965 Pubmed.

2007

• van den Bogaart, G., Hermans, N., Krasnikov, V. & Poolman, B. (2007) Protein mobility and diffusive barriers in Escherichia coli: consequences of osmotic stress. Mol. Microbiol. 64: 858-871 Pubmed.
• van den Bogaart, G., Mika, J.T., Krasnikov, V. & Poolman, B. (2007) The lipid dependence of melittin action investigated by dual-color fluorescence burst analysis. Biophys. J. 93: 154-163 Pubmed.
• van den Bogaart, G., Krasnikov, V. & Poolman, B. (2007) Dual-color fluorescence-burst analysis to probe protein efflux through the mechanosensitive channel MscL. Biophys. J. 92: 1233-1240 Pubmed.
• van den Bogaart, G., Hermans, N., Krasnikov, V., de Vries, A.H. & Poolman, B. (2007) On the decrease in lateral mobility of phospholipids by sugars. Biophys. J. 92: 1598-1605 Pubmed.

2006

• Veldhuis, G., Hink, M., Krasnikov, V., van den Bogaart, G., Hoeboer, J., Visser, A.J., Broos, J. & Poolman, B. (2006) The oligomeric state and stability of the mannitol transporter, EnzymeII(mtl), from Escherichia coli: a fluorescence correlation spectroscopy study. Protein Sci. 15: 1977-1986 Pubmed.

2005

• Doeven, M.K., Folgering, J.H., Krasnikov, V., Geertsma, E.R., van den Bogaart, G. & Poolman, B. (2005) Distribution, lateral mobility and function of membrane proteins incorporated into giant unilamellar vesicles. Biophys. J. 88: 1134-1142 Pubmed.

Geert van den Bogaart 2015